Evolving populationsΒΆ

  • Mating Schemes
    • Control the size of the offspring generation
    • Advanced use of demographic functions *
    • Determine the number of offspring during mating
    • Dynamic population size determined by number of offspring *
    • Determine sex of offspring
    • Monogamous mating
    • Polygamous mating
    • Asexual random mating
    • Mating in haplodiploid populations
    • Self-fertilization
    • Heterogeneous mating schemes *
    • Conditional mating schemes
  • Simulator
    • Add, access and remove populations from a simulator
    • Number of generations to evolve
    • Evolve populations in a simulator
  • Non-random and customized mating schemes *
    • The structure of a homogeneous mating scheme *
    • Offspring generators *
    • Genotype transmitters *
    • A Python parent chooser *
    • Using C++ to implement a parent chooser **
  • Age structured populations with overlapping generations **
  • Tracing allelic lineage *
  • Pedigrees
    • Create a pedigree object
    • Locate close and remote relatives of each individual
    • Identify pedigrees (related individuals)
    • Save and load pedigrees
  • Evolve a population following a specified pedigree structure **
  • Simulation of mitochondrial DNAs (mtDNAs) *

simuPOP

Navigation

  • Front Matter
  • Introduction
  • Loading and running simuPOP
  • Individuals and Populations
  • simuPOP Operators
  • Evolving populations
    • Mating Schemes
    • Simulator
    • Non-random and customized mating schemes *
    • Age structured populations with overlapping generations **
    • Tracing allelic lineage *
    • Pedigrees
    • Evolve a population following a specified pedigree structure **
    • Simulation of mitochondrial DNAs (mtDNAs) *
  • Utility Modules
  • A real world example
  • Front Matter
  • simuPOP Components
  • Operator References
  • Utility Modules

Related Topics

  • Documentation overview
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